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1

Strain-level diversity drives alternative community types in millimetre-scale granular biofilms

Leventhal, Gabriel E., Boix, Carles, Kuechler, Urs, Enke, Tim N., Sliwerska, Elzbieta, Holliger, Christof, Cordero, Otto X.

Journal:

Nature Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 5.71 MB

english, 2018

2

Physics-based prediction of biopolymer degradation

Abi-Akl, Rami, Ledieu, Elise, Enke, Tim Niklas, Cordero, Otto X, Cohen, Tal

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 2.39 MB

english, 2019

3

Large changes in regulome size herald the main prokaryotic lineages

Otto X. Cordero, P. Hogeweg

Journal:

Trends in Genetics

Année:

2007

Langue:

english

Fichier:

PDF, 1.39 MB

english, 2007

4

Regulome size in Prokaryotes: universality and lineage-specific variations

Otto X. Cordero, Paulien Hogeweg

Journal:

Trends in Genetics

Année:

2009

Langue:

english

Fichier:

PDF, 302 KB

english, 2009

5

Ecology drives a global network of gene exchange connecting the human microbiome

Smillie, Chris S., Smith, Mark B., Friedman, Jonathan, Cordero, Otto X., David, Lawrence A., Alm, Eric J.

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 574 KB

english, 2011

6

Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus , Pelagibacter and the OM60 clade

Sharma, Adrian K., Becker, Jamie W., Ottesen, Elizabeth A., Bryant, Jessica A., Duhamel, Solange, Karl, David M., Cordero, Otto X., Repeta, Daniel J., DeLong, Edward F.

Journal:

Environmental Microbiology

Année:

2014

Langue:

english

Fichier:

PDF, 1.49 MB

english, 2014

7

Explaining microbial genomic diversity in light of evolutionary ecology

Cordero, Otto X., Polz, Martin F.

Journal:

Nature Reviews Microbiology

Année:

2014

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2014

8

Effects of harmful cyanobacteria on the freshwater pathogenic free-living amoeba Acanthamoeba castellanii

Urrutia-Cordero, Pablo, Agha, Ramsy, Cirés, Samuel, Lezcano, María Ángeles, Sánchez-Contreras, María, Waara, Karl-Otto, Utkilen, Hans, Quesada, Antonio

Journal:

Aquatic Toxicology

Année:

2013

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2013

9

Eco-Evolutionary Dynamics of Episomes among Ecologically Cohesive Bacterial Populations

Xue, Hong, Cordero, Otto X., Camas, Francisco M., Trimble, William, Meyer, Folker, Guglielmini, Julien, Rocha, Eduardo P. C., Polz, Martin F.

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 2.05 MB

english, 2015

10

Geometry Shapes Evolution of Early Multicellularity

Libby, Eric, Ratcliff, William, Travisano, Michael, Kerr, Ben, Cordero, Otto X.

Journal:

PLoS Computational Biology

Année:

2014

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2014

11

Gene-specific selective sweeps in bacteria and archaea caused by negative frequency-dependent selection

Takeuchi, Nobuto, Cordero, Otto X, Koonin, Eugene V, Kaneko, Kunihiko

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 709 KB

english, 2015

12

Challenges in microbial ecology: building predictive understanding of community function and dynamics

Widder, Stefanie, Allen, Rosalind J, Pfeiffer, Thomas, Curtis, Thomas P, Wiuf, Carsten, Sloan, William T, Cordero, Otto X, Brown, Sam P, Momeni, Babak, Shou, Wenying, Kettle, Helen, Flint, Harry J, Ha

Journal:

The ISME Journal

Année:

2016

Langue:

english

Fichier:

PDF, 2.85 MB

english, 2016

13

A genomic comparison of 13 symbiotic Vibrio fischeri isolates from the perspective of their host source and colonization behavior

Bongrand, Clotilde, Koch, Eric J, Moriano-Gutierrez, Silvia, Cordero, Otto X, McFall-Ngai, Margaret, Polz, Martin F, Ruby, Edward G

Journal:

The ISME Journal

Année:

2016

Langue:

english

Fichier:

PDF, 886 KB

english, 2016

14

Microbial interactions and community assembly at microscales

Cordero, Otto X, Datta, Manoshi S

Journal:

Current Opinion in Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 1.77 MB

english, 2016

15

Microbial Ecosystem Follows Deterministic Dynamics

Cordero, Otto X.

Journal:

Physics (American Physical Society)

Année:

2015

Langue:

english

Fichier:

PDF, 452 KB

english, 2015

16

A particularly useful system to study the ecology of microbes

Cordero, Otto X., Stocker, Roman

Journal:

Environmental Microbiology Reports

Année:

2016

Langue:

english

Fichier:

PDF, 557 KB

english, 2016

17

Bacterial evolution: Genomics of metabolic trade-offs

Polz, Martin F., Cordero, Otto X.

Journal:

Nature Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 172 KB

english, 2016

18

Microbial interactions lead to rapid micro-scale successions on model marine particles

Datta, Manoshi S., Sliwerska, Elzbieta, Gore, Jeff, Polz, Martin F., Cordero, Otto X.

Journal:

Nature Communications

Année:

2016

Langue:

english

Fichier:

PDF, 851 KB

english, 2016

19

Endemic cyanophages and the puzzle of phage-bacteria coevolution

Cordero, Otto X.

Journal:

Environmental Microbiology

Année:

2017

Langue:

english

Fichier:

PDF, 585 KB

english, 2017

20

Solving the structure–function puzzle

Ma, Lei, Cordero, Otto X.

Journal:

Nature Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2018

21

Microscale ecology regulates particulate organic matter turnover in model marine microbial communities

Enke, Tim N., Leventhal, Gabriel E., Metzger, Matthew, Saavedra, José T., Cordero, Otto X.

Journal:

Nature Communications

Année:

2018

Langue:

english

Fichier:

PDF, 757 KB

english, 2018

22

Cooperation and spatial self-organization determine rate and efficiency of particulate organic matter degradation in marine bacteria

Ebrahimi, Ali, Schwartzman, Julia, Cordero, Otto X.

Journal:

Proceedings of the National Academy of Sciences

Année:

2019

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2019

23

Multicellular behaviour enables cooperation in microbial cell aggregates

Ebrahimi, Ali, Schwartzman, Julia, Cordero, Otto X.

Journal:

Philosophical Transactions Biological Sciences

Année:

2019

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2019

24

Illuminating microbial species‐specific effects on organic matter remineralization in marine sediments

Mahmoudi, Nagissa, Enke, Tim N., Beaupré, Steven R., Teske, Andreas P., Cordero, Otto X., Pearson, Ann

Journal:

Environmental Microbiology

Année:

2019

Langue:

english

Fichier:

PDF, 1.89 MB

english, 2019

25

Context-dependent dynamics lead to the assembly of functionally distinct microbial communities

Bittleston, Leonora S., Gralka, Matti, Leventhal, Gabriel E., Mizrahi, Itzhak, Cordero, Otto X.

Journal:

Nature Communications

Année:

2020

Langue:

english

Fichier:

PDF, 17.64 MB

english, 2020

26

Stochasticity constrained by deterministic effects of diet and age drive rumen microbiome assembly dynamics

Furman, Ori, Shenhav, Liat, Sasson, Goor, Kokou, Fotini, Honig, Hen, Jacoby, Shamay, Hertz, Tomer, Cordero, Otto X., Halperin, Eran, Mizrahi, Itzhak

Journal:

Nature Communications

Année:

2020

Fichier:

PDF, 2.31 MB

2020

27

Rhizobiome shields plants from infection

Pollak, Shaul, Cordero, Otto X.

Journal:

Nature Microbiology

Année:

2020

Fichier:

PDF, 1001 KB

2020

28

Trophic Interactions and the Drivers of Microbial Community Assembly

Gralka, Matti, Szabo, Rachel, Stocker, Roman, Cordero, Otto X.

Journal:

Current Biology

Année:

2020

Fichier:

PDF, 1.82 MB

2020